MolNFT v1 · #86434 · protein

Crystal structure of phosphoserine phosphatase from T. onnurineus

4B6J: “Crystal structure of phosphoserine phosphatase from T. onnurineus”. X-ray diffraction, 16 pockets (best druggability 0.82). MolNFT v1 #86434 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4B6J
Type: protein
Length: 800 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphoserine phosphatase
EC: 3.1.3.3
UniProt: B6YX36
Pockets: 16 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Phosphoserine phosphatase (EC 3.1.3.3)	protein	200	39% helix, 25% strand	B6YX36

Pockets

16 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	654	0.82	0.87	77	empty
2	169	0.72	0.90	26	empty
3	231	0.69	0.86	34	empty
4	267	0.66	0.83	36	empty
5	263	0.64	0.82	37	empty

Interfaces

5 interfaces between chains.

B–C · 1323 Å² buried · 27 hydrogen bonds · protein-protein
A–D · 1298 Å² buried · 24 hydrogen bonds · protein-protein
A–C · 1040 Å² buried · 6 hydrogen bonds · protein-protein
A–B · 353 Å² buried · 2 hydrogen bonds · protein-protein
C–D · 348 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

4B6J · Crystal structure of phosphoserine phosphatase from T. onnurineus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B6YX36
Elsewhere: RCSB PDB 4B6J · PDBe 4B6J · UniProt B6YX36

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