Research workbench
Crystal structure of phosphoserine phosphatase from T. onnurineus
Analyse Crystal structure of phosphoserine phosphatase from T. onnurineus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4B6J
- Type
- protein
- Length
- 800 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoserine phosphatase
- EC
- 3.1.3.3
- UniProt
- B6YX36
- Pockets
- 16 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Phosphoserine phosphatase (EC 3.1.3.3) | protein | 200 | 39% helix, 25% strand | B6YX36 |
Pockets
16 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 654 | 0.82 | 0.87 | 77 | empty |
| 2 | 169 | 0.72 | 0.90 | 26 | empty |
| 3 | 231 | 0.69 | 0.86 | 34 | empty |
| 4 | 267 | 0.66 | 0.83 | 36 | empty |
| 5 | 263 | 0.64 | 0.82 | 37 | empty |
Interfaces
5 interfaces between chains.
- B–C · 1323 Ų buried · 27 hydrogen bonds · protein-protein
- A–D · 1298 Ų buried · 24 hydrogen bonds · protein-protein
- A–C · 1040 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 353 Ų buried · 2 hydrogen bonds · protein-protein
- C–D · 348 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 4B6J · Crystal structure of phosphoserine phosphatase from T. onnurineus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6YX36
- Elsewhere: RCSB PDB 4B6J · PDBe 4B6J · UniProt B6YX36
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