MolNFT v1 · #85910 · protein
Dodecahedron formed of penton base protein from adenovirus AD3
4AQQ · L2 protein III (penton base): “Dodecahedron formed of penton base protein from adenovirus AD3”. X-ray diffraction, 1 ligand (CA), 6 pockets (best druggability 0.49). MolNFT v1 #85910 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4AQQ
- Type
- protein
- Length
- 462 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L2 protein III (penton base)
- UniProt
- Q2Y0H9
- Ligands
- CA
- Pockets
- 6 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L2 protein III (penton base) | protein | 462 | 16% helix, 25% strand | Q2Y0H9 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 147 | 0.49 | 0.79 | 24 | empty |
| 2 | 171 | 0.46 | 0.76 | 21 | empty |
| 3 | 61 | 0.43 | 0.82 | 19 | empty |
| 4 | 145 | 0.41 | 0.74 | 25 | empty |
| 5 | 68 | 0.29 | 0.73 | 20 | empty |
Compared structures
- 4AQQ · Dodecahedron formed of penton base protein from adenovirus Ad3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2Y0H9
- Elsewhere: RCSB PDB 4AQQ · PDBe 4AQQ · UniProt Q2Y0H9
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