MolNFT v1 · #85767 · protein

Crystal structure of lactobacillus reuteri 121 N-terminally truncated glucansucrase gtfa

4AMC: “Crystal structure of lactobacillus reuteri 121 N-terminally truncated glucansucrase gtfa”. X-ray diffraction, 1 ligand (CA), 8 pockets (best druggability 0.73). MolNFT v1 #85767 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 4AMC
Type: protein
Length: 1,019 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glucansucrase
EC: 2.4.1.5
UniProt: Q5SBL9
Ligands: CA
Pockets: 8 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glucansucrase (EC 2.4.1.5)	protein	1019	23% helix, 21% strand	Q5SBL9

Ligands and binding sites

CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	616	0.73	0.80	58	empty
2	329	0.62	0.79	38	empty
3	123	0.46	0.78	17	empty
4	82	0.42	0.79	20	empty
5	105	0.38	0.75	23	empty

Compared structures

4AMC · Crystal structure of Lactobacillus reuteri 121 N-terminally truncated glucansucrase GTFA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5SBL9
Elsewhere: RCSB PDB 4AMC · PDBe 4AMC · UniProt Q5SBL9

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