MolNFT v1 · #8525 · protein
Structure of the E.COLI ATP-phosphoribosyltransferase
1H3D: “Structure of the E.COLI ATP-phosphoribosyltransferase”. X-ray diffraction, 1 ligand (AMP), 1 pocket (best druggability 0.50). MolNFT v1 #8525 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1H3D
- Type
- protein
- Length
- 288 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP-phosphoribosyltransferase
- EC
- 2.4.2.17
- UniProt
- P10366
- Ligands
- AMP
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP-phosphoribosyltransferase (EC 2.4.2.17) | protein | 288 | 33% helix, 27% strand | P10366 |
Ligands and binding sites
- AMP · Adenosine monophosphate · ligand · chains A
- TLA · L(+)-tartaric acid · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 192 | 0.50 | 0.77 | 29 | empty |
Compared structures
- 1H3D · Structure of the E.COLI ATP-phosphoribosyltransferase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P10366
- Elsewhere: RCSB PDB 1H3D · PDBe 1H3D · UniProt P10366
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