MolNFT v1 · #85123 · protein

Structure of duck rig-I helicase domain

4A2P · Retinoic acid inducible protein I: “Structure of duck rig-I helicase domain”. X-ray diffraction, 7 pockets (best druggability 0.61). MolNFT v1 #85123 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4A2P
Type: protein
Length: 479 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Retinoic acid inducible protein I
UniProt: D3TI84
Pockets: 7 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 58% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Retinoic acid inducible protein I	protein	479	58% helix, 12% strand	D3TI84

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	496	0.61	0.75	45	empty
2	107	0.43	0.78	17	empty
3	77	0.37	0.77	12	empty
4	74	0.35	0.77	15	empty
5	63	0.28	0.74	20	empty

Compared structures

4A2P · Structure of duck RIG-I helicase domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D3TI84
Elsewhere: RCSB PDB 4A2P · PDBe 4A2P · UniProt D3TI84

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