Research workbench
Structure of duck rig-I helicase domain
Analyse Structure of duck rig-I helicase domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4A2P
- Type
- protein
- Length
- 479 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Retinoic acid inducible protein I
- UniProt
- D3TI84
- Pockets
- 7 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 58% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Retinoic acid inducible protein I | protein | 479 | 58% helix, 12% strand | D3TI84 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 496 | 0.61 | 0.75 | 45 | empty |
| 2 | 107 | 0.43 | 0.78 | 17 | empty |
| 3 | 77 | 0.37 | 0.77 | 12 | empty |
| 4 | 74 | 0.35 | 0.77 | 15 | empty |
| 5 | 63 | 0.28 | 0.74 | 20 | empty |
Compared structures
- 4A2P · Structure of duck RIG-I helicase domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D3TI84
- Elsewhere: RCSB PDB 4A2P · PDBe 4A2P · UniProt D3TI84
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