MolNFT v1 · #84975 · DNA
5'-D(*CP*GP*CP*(CH2-DM1)GP*CP*G)-3'
427D · DNA (5'-D(*CP*GP*CP*(G49)P*CP*G)-3'): “5'-D(*CP*GP*CP*(CH2-DM1)GP*CP*G)-3'”. X-ray diffraction, 1 ligand (DM1). MolNFT v1 #84975 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 427D
- Type
- DNA
- Length
- 6 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*(G49)P*CP*G)-3')
- Ligands
- DM1
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*GP*CP*(G49)P*CP*G)-3') | dna | 6 | — | — |
Ligands and binding sites
- DM1 · Daunomycin · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent, 1 modified (covalent ligand, nucleotide modification).
Compared structures
- 427D · 5'-D(*CP*GP*CP*(CH2-DM1)GP*CP*G)-3' · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 427D · PDBe 427D
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