MolNFT v1 · #84952 · DNA + RNA

Crystal structure of the RNA/DNA hybrid R(GAAGAGAAGC). D(GCTTCTCTTC)

404D · 5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3': “Crystal structure of the RNA/DNA hybrid R(GAAGAGAAGC). D(GCTTCTCTTC)”. X-ray diffraction. MolNFT v1 #84952 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 404D
Type: DNA + RNA
Length: 20 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'; 5'-D(*GP*CP*TP*TP*CP*TP*CP*TP*TP*C)-3'

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	5'-R(GPAPAPGPAPGPAPAPGPC)-3'	rna	10	—	—
B	5'-D(GPCPTPTPCPTPCPTPTPC)-3'	dna	10	—	—

Interfaces

1 interface between chains.

A–B · 468 Å² buried · 38 hydrogen bonds · nucleic-nucleic

Compared structures

404D · Crystal structure of the RNA/DNA hybrid R(GAAGAGAAGC). D(GCTTCTCTTC) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 404D · PDBe 404D

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