Research workbench
Crystal structure of the RNA/DNA hybrid R(GAAGAGAAGC). D(GCTTCTCTTC)
Analyse Crystal structure of the RNA/DNA hybrid R(GAAGAGAAGC). D(GCTTCTCTTC) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 404D
- Type
- DNA + RNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'; 5'-D(*GP*CP*TP*TP*CP*TP*CP*TP*TP*C)-3'
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3' | rna | 10 | — | — |
| B | 5'-D(*GP*CP*TP*TP*CP*TP*CP*TP*TP*C)-3' | dna | 10 | — | — |
Interfaces
1 interface between chains.
- A–B · 468 Ų buried · 38 hydrogen bonds · nucleic-nucleic
Compared structures
- 404D · Crystal structure of the RNA/DNA hybrid R(GAAGAGAAGC). D(GCTTCTCTTC) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 404D · PDBe 404D
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