MolNFT v1 · #84267 · protein

N-terminal domain of pneumococcal phtd protein with bound ZN(II)

3ZFJ · Pneumococcal histidine triad protein D: “N-terminal domain of pneumococcal phtd protein with bound ZN(II)”. Solution nmr, 1 ligand (ZN), 1 pocket (best druggability 0.29). MolNFT v1 #84267 on GenesisL1: 3D structure, binding sites…

PDB: 3ZFJ
Type: protein
Length: 119 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pneumococcal histidine triad protein D
UniProt: Q04KS8
Ligands: ZN
Pockets: 1 · best druggability 0.29

Structure

solution nmr · 1 distinct chain · 13% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pneumococcal histidine triad protein D	protein	119	13% helix, 34% strand	Q04KS8

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.29	0.76	13	empty

Compared structures

3ZFJ · N-terminal domain of pneumococcal PhtD protein with bound Zn(II) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q04KS8
Elsewhere: RCSB PDB 3ZFJ · PDBe 3ZFJ · UniProt Q04KS8

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