Research workbench
N-terminal domain of pneumococcal phtd protein with bound ZN(II)
Analyse N-terminal domain of pneumococcal phtd protein with bound ZN(II) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ZFJ
- Type
- protein
- Length
- 119 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pneumococcal histidine triad protein D
- UniProt
- Q04KS8
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.29
Structure
solution nmr · 1 distinct chain · 13% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pneumococcal histidine triad protein D | protein | 119 | 13% helix, 34% strand | Q04KS8 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.29 | 0.76 | 13 | empty |
Compared structures
- 3ZFJ · N-terminal domain of pneumococcal PhtD protein with bound Zn(II) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04KS8
- Elsewhere: RCSB PDB 3ZFJ · PDBe 3ZFJ · UniProt Q04KS8
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