MolNFT v1 · #84148 · protein

Monomeric subunit of tubz from bacteriophage phikz

3ZBP · PHIKZ039: “Monomeric subunit of tubz from bacteriophage phikz”. X-ray diffraction, 1 ligand (GDP), 2 pockets (best druggability 0.52). MolNFT v1 #84148 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3ZBP
Type: protein
Length: 301 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PHIKZ039
UniProt: Q8SDC3
Ligands: GDP
Pockets: 2 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	PHIKZ039	protein	301	44% helix, 20% strand	Q8SDC3

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	192	0.52	0.78	39	GDP
2	103	0.35	0.73	19	empty

Compared structures

3ZBP · Monomeric subunit of TubZ from Bacteriophage PhiKZ · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8SDC3
Elsewhere: RCSB PDB 3ZBP · PDBe 3ZBP · UniProt Q8SDC3

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