MolNFT v1 · #84044 · protein

Crystal structure of metagenome-derived glycoside hydrolase family 9 endoglucanase

3X17: “Crystal structure of metagenome-derived glycoside hydrolase family 9 endoglucanase”. X-ray diffraction, 2 ligands (CA, ZN), 6 pockets (best druggability 0.76). MolNFT v1 #84044 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 3X17
Type: protein
Length: 1,096 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endoglucanase
EC: 3.2.1.4
UniProt: W8PF21
Ligands: CA, ZN
Pockets: 6 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A	Endoglucanase (EC 3.2.1.4)	protein	548	39% helix, 14% strand	W8PF21

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains B, A
ZN · Zinc ion · metal · 2 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1156	0.76	0.78	111	empty
2	230	0.56	0.78	31	empty
3	247	0.54	0.76	30	empty
4	125	0.49	0.80	25	empty
5	52	0.49	0.86	16	empty

Interfaces

1 interface between chains.

B–A · 829 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

3X17 · Crystal structure of metagenome-derived glycoside hydrolase family 9 endoglucanase · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt W8PF21
Elsewhere: RCSB PDB 3X17 · PDBe 3X17 · UniProt W8PF21

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.