MolNFT v1 · #84035 · protein

Crystal structure of PLEKHM1 lir-fused human LC3B_2-119

3X0W · Microtubule-associated proteins 1A/1B light chain 3B: “Crystal structure of PLEKHM1 lir-fused human LC3B_2-119”. X-ray diffraction, 2 pockets (best druggability 0.38). MolNFT v1 #84035 on GenesisL1: 3D structure, binding sites and…

PDB: 3X0W
Type: protein
Length: 247 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Microtubule-associated proteins 1A/1B light chain 3B
UniProt: Q9GZQ8
Pockets: 2 · best druggability 0.38

Structure

x-ray diffraction · 2 distinct chains · 32% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Microtubule-associated proteins 1A/1B light chain 3B	protein	124	33% helix, 21% strand	Q9GZQ8
B	Microtubule-associated proteins 1A/1B light chain 3B	protein	123	31% helix, 22% strand	Q9GZQ8

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	137	0.38	0.73	23	empty
2	80	0.31	0.73	15	empty

Interfaces

1 interface between chains.

A–B · 590 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

3X0W · Crystal structure of PLEKHM1 LIR-fused human LC3B_2-119 · the same entry in another collection · chain A against A, TM-score 1.00
Q9GZQ8 · AlphaFold monomer V2.0 prediction for microtubule-associated proteins 1A/1B light chain… · a predicted model of the same protein · chain B against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9GZQ8
Elsewhere: RCSB PDB 3X0W · PDBe 3X0W · UniProt Q9GZQ8

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