MolNFT v1 · #83839 · protein

Structure basis of inactivating cell abscission with chimera peptide 2

3WUV · Centrosomal protein of 55 kda: “Structure basis of inactivating cell abscission with chimera peptide 2”. X-ray diffraction, 4 pockets (best druggability 0.75). MolNFT v1 #83839 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 3WUV
Type: protein
Length: 749 residues
Chains: 18
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Centrosomal protein of 55 kda; Peptide from programmed cell death 6-interacting protein
UniProt: Q53EZ4, Q8WUM4
Pockets: 4 · best druggability 0.75

Structure

x-ray diffraction · 9 distinct chains · 85% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, J	Centrosomal protein of 55 kda	protein	56	84% helix, 0% strand	Q53EZ4
B	Centrosomal protein of 55 kda	protein	60	80% helix, 0% strand	Q53EZ4
C, F, I, L, O, R	Peptide from programmed cell death 6-interacting protein	protein	13	0% helix, 0% strand	Q8WUM4
D, G	Centrosomal protein of 55 kda	protein	50	92% helix, 0% strand	Q53EZ4
E, H, N	Centrosomal protein of 55 kda	protein	55	85% helix, 0% strand	Q53EZ4
K	Centrosomal protein of 55 kda	protein	61	85% helix, 0% strand	Q53EZ4
M	Centrosomal protein of 55 kda	protein	53	96% helix, 0% strand	Q53EZ4
P	Centrosomal protein of 55 kda	protein	58	95% helix, 0% strand	Q53EZ4
Q	Centrosomal protein of 55 kda	protein	62	82% helix, 0% strand	Q53EZ4

Pockets

4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	792	0.75	0.79	77	empty
2	483	0.68	0.79	41	empty
3	298	0.65	0.81	34	empty
4	210	0.53	0.77	25	empty

Interfaces

43 interfaces between chains.

P–Q · 1266 Å² buried · 8 hydrogen bonds · protein-protein
G–H · 1223 Å² buried · 8 hydrogen bonds · protein-protein
D–E · 1202 Å² buried · 9 hydrogen bonds · protein-protein
J–K · 1191 Å² buried · 6 hydrogen bonds · protein-protein
A–B · 1168 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

3WUV · Structure basis of inactivating cell abscission with chimera peptide 2 · the same entry in another collection · chain I against I, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q53EZ4
Every structure of UniProt Q8WUM4
Elsewhere: RCSB PDB 3WUV · PDBe 3WUV · UniProt Q53EZ4 · UniProt Q8WUM4

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