MolNFT v1 · #83448 · protein

Gabarap-lir peptide complex

3WIM · Gamma-aminobutyric acid receptor-associated protein: “Gabarap-lir peptide complex”. X-ray diffraction. MolNFT v1 #83448 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3WIM
Type: protein
Length: 129 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gamma-aminobutyric acid receptor-associated protein; Wd repeat and fyve domain-containing…
UniProt: O95166, Q8IZQ1

Structure

x-ray diffraction · 2 distinct chains · 30% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Gamma-aminobutyric acid receptor-associated protein	protein	117	33% helix, 22% strand	O95166
B	Wd repeat and fyve domain-containing protein 3	protein	12	0% helix, 42% strand	Q8IZQ1

Interfaces

1 interface between chains.

A–B · 717 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

3WIM · GABARAP-LIR peptide complex · the same entry in another collection · chain A against A, TM-score 1.00
O95166 · AlphaFold monomer V2.0 prediction for gamma-aminobutyric acid receptor-associated protein… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O95166
Every structure of UniProt Q8IZQ1
Elsewhere: RCSB PDB 3WIM · PDBe 3WIM · UniProt O95166 · UniProt Q8IZQ1

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