MolNFT v1 · #83126 · protein
Crystal structure of CCM3 in complex with the C-terminal regulatory domain of STK25
3W8H · Programmed cell death protein 10: “Crystal structure of CCM3 in complex with the C-terminal regulatory domain of STK25”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #83126 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3W8H
- Type
- protein
- Length
- 256 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Programmed cell death protein 10; SERINE/THREONINE-protein kinase 25
- EC
- 2.7.11.1
- UniProt
- Q9BUL8, O00506
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Programmed cell death protein 10 | protein | 190 | 78% helix, 0% strand | Q9BUL8 |
| B | SERINE/THREONINE-protein kinase 25 (EC 2.7.11.1) | protein | 66 | 74% helix, 0% strand | O00506 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1725 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 3W8H · Crystal structure of CCM3 in complex with the C-terminal regulatory domain of STK25 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9BUL8 · AlphaFold monomer V2.0 prediction for programmed cell death protein 10 (Q9BUL8) · a predicted model of the same protein · chain A against A, TM-score 0.95
- O00506 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase 25 (O00506) · a predicted model of the same protein · chain B against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BUL8
- Every structure of UniProt O00506
- Elsewhere: RCSB PDB 3W8H · PDBe 3W8H · UniProt Q9BUL8 · UniProt O00506
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