MolNFT v1 · #82961 · protein

Structual basis for the recognition of UBC13 by the shigella flexneri effector ospi

3W30 · ORF169B: “Structual basis for the recognition of UBC13 by the shigella flexneri effector ospi”. X-ray diffraction, 3 pockets (best druggability 0.38). MolNFT v1 #82961 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3W30
Type: protein
Length: 384 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ORF169B
UniProt: Q8VSD5
Pockets: 3 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	ORF169B	protein	192	40% helix, 16% strand	Q8VSD5

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	68	0.38	0.78	20	empty
2	50	0.33	0.78	14	empty
3	52	0.28	0.75	21	empty

Compared structures

3W30 · Structual basis for the recognition of Ubc13 by the Shigella flexneri effector OspI · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8VSD5
Elsewhere: RCSB PDB 3W30 · PDBe 3W30 · UniProt Q8VSD5

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