Research workbench
Structual basis for the recognition of UBC13 by the shigella flexneri effector ospi
Analyse Structual basis for the recognition of UBC13 by the shigella flexneri effector… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3W30
- Type
- protein
- Length
- 384 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ORF169B
- UniProt
- Q8VSD5
- Pockets
- 3 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | ORF169B | protein | 192 | 40% helix, 16% strand | Q8VSD5 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.38 | 0.78 | 20 | empty |
| 2 | 50 | 0.33 | 0.78 | 14 | empty |
| 3 | 52 | 0.28 | 0.75 | 21 | empty |
Compared structures
- 3W30 · Structual basis for the recognition of Ubc13 by the Shigella flexneri effector OspI · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8VSD5
- Elsewhere: RCSB PDB 3W30 · PDBe 3W30 · UniProt Q8VSD5
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