MolNFT v1 · #82793 · protein

Crystal structure of saccharomyces cerevisiae ATG8 complexed with ATG32 aim

3VXW · Autophagy-related protein 8: “Crystal structure of saccharomyces cerevisiae ATG8 complexed with ATG32 aim”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #82793 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3VXW
Type: protein
Length: 117 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Autophagy-related protein 8; Peptide from autophagy-related protein 32
UniProt: P38182, P40458
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains · 32% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Autophagy-related protein 8	protein	111	34% helix, 23% strand	P38182
B	Peptide from autophagy-related protein 32	protein	6	0% helix, 33% strand	P40458

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 465 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

3VXW · Crystal structure of Saccharomyces cerevisiae Atg8 complexed with Atg32 AIM · the same entry in another collection · chain A against A, TM-score 1.00
P38182 · AlphaFold monomer V2.0 prediction for autophagy-related protein 8 (P38182) · a predicted model of the same protein · chain A against A, TM-score 0.97
P40458 · AlphaFold monomer V2.0 prediction for autophagy-related protein 32 (P40458) · a predicted model of the same protein · chain B against A, TM-score 0.75

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P38182
Every structure of UniProt P40458
Elsewhere: RCSB PDB 3VXW · PDBe 3VXW · UniProt P38182 · UniProt P40458

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