Research workbench
Crystal structure of saccharomyces cerevisiae ATG8 complexed with ATG32 aim
Analyse Crystal structure of saccharomyces cerevisiae ATG8 complexed with ATG32 aim in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VXW
- Type
- protein
- Length
- 117 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Autophagy-related protein 8; Peptide from autophagy-related protein 32
- UniProt
- P38182, P40458
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Autophagy-related protein 8 | protein | 111 | 34% helix, 23% strand | P38182 |
| B | Peptide from autophagy-related protein 32 | protein | 6 | 0% helix, 33% strand | P40458 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 465 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 3VXW · Crystal structure of Saccharomyces cerevisiae Atg8 complexed with Atg32 AIM · the same entry in another collection · chain A against A, TM-score 1.00
- P38182 · AlphaFold monomer V2.0 prediction for autophagy-related protein 8 (P38182) · a predicted model of the same protein · chain A against A, TM-score 0.97
- P40458 · AlphaFold monomer V2.0 prediction for autophagy-related protein 32 (P40458) · a predicted model of the same protein · chain B against A, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38182
- Every structure of UniProt P40458
- Elsewhere: RCSB PDB 3VXW · PDBe 3VXW · UniProt P38182 · UniProt P40458
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