MolNFT v1 · #82734 · protein

Crystal strucuture of ramr (transcriptional regurator of tetr family) from salmonella typhimurium

3VVX · Putative regulatory protein: “Crystal strucuture of ramr (transcriptional regurator of tetr family) from salmonella typhimurium”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.83). MolNFT v1 #82734 on GenesisL1…

PDB: 3VVX
Type: protein
Length: 376 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative regulatory protein
UniProt: D0ZP76
Ligands: SO4
Pockets: 4 · best druggability 0.83

Structure

x-ray diffraction · 2 distinct chains · 78% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative regulatory protein	protein	191	76% helix, 1% strand	D0ZP76
B	Putative regulatory protein	protein	185	80% helix, 1% strand	D0ZP76

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	218	0.83	0.96	31	empty
2	382	0.83	0.92	50	empty
3	353	0.58	0.76	45	empty
4	107	0.45	0.79	23	empty

Interfaces

1 interface between chains.

A–B · 1287 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

3VVX · Crystal Strucuture of RamR (Transcriptional Regurator of TetR Family) from Salmonella… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D0ZP76
Elsewhere: RCSB PDB 3VVX · PDBe 3VVX · UniProt D0ZP76

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