Research workbench
Crystal strucuture of ramr (transcriptional regurator of tetr family) from salmonella typhimurium
Analyse Crystal strucuture of ramr (transcriptional regurator of tetr family) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VVX
- Type
- protein
- Length
- 376 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative regulatory protein
- UniProt
- D0ZP76
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 78% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative regulatory protein | protein | 191 | 76% helix, 1% strand | D0ZP76 |
| B | Putative regulatory protein | protein | 185 | 80% helix, 1% strand | D0ZP76 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 218 | 0.83 | 0.96 | 31 | empty |
| 2 | 382 | 0.83 | 0.92 | 50 | empty |
| 3 | 353 | 0.58 | 0.76 | 45 | empty |
| 4 | 107 | 0.45 | 0.79 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 1287 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 3VVX · Crystal Strucuture of RamR (Transcriptional Regurator of TetR Family) from Salmonella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0ZP76
- Elsewhere: RCSB PDB 3VVX · PDBe 3VVX · UniProt D0ZP76
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