MolNFT v1 · #82704 · protein
Crystal structure of caenorhabditis elegans galectin lec-6
3VV1 · Protein lec-6: “Crystal structure of caenorhabditis elegans galectin lec-6”. X-ray diffraction, 3 ligands (FUC, GAL, MG). MolNFT v1 #82704 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3VV1
- Type
- protein
- Length
- 281 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein lec-6
- UniProt
- Q9N384
- Ligands
- FUC, GAL, MG
Structure
x-ray diffraction · 2 distinct chains · 1% helix, 58% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein lec-6 | protein | 141 | 2% helix, 58% strand | Q9N384 |
| B | Protein lec-6 | protein | 140 | 0% helix, 57% strand | Q9N384 |
Ligands and binding sites
- FUC · alpha-L-fucopyranose · sugar · 2 copies · chains A, B
- GAL · beta-D-galactopyranose · sugar · 2 copies · chains A, B
- MG · Magnesium ion · metal · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 977 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 3VV1 · Crystal Structure of Caenorhabditis elegans galectin LEC-6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9N384
- Elsewhere: RCSB PDB 3VV1 · PDBe 3VV1 · UniProt Q9N384
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