MolNFT v1 · #82620 · protein
The crystal structure of novel chondroition lyase odv-E66, baculovirus envelope protein
3VSN · Occlusion-derived virus envelope protein E66: “The crystal structure of novel chondroition lyase odv-E66, baculovirus envelope protein”. X-ray diffraction, 1 ligand (IOD), 4 pockets (best druggability 0.69). MolNFT v1 #82620 on…
- PDB
- 3VSN
- Type
- protein
- Length
- 632 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Occlusion-derived virus envelope protein E66
- UniProt
- Q00704
- Ligands
- IOD
- Pockets
- 4 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Occlusion-derived virus envelope protein E66 | protein | 632 | 29% helix, 28% strand | Q00704 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.69 | 0.97 | 17 | empty |
| 2 | 68 | 0.40 | 0.79 | 12 | IOD |
| 3 | 112 | 0.37 | 0.74 | 22 | IOD, GOL |
| 4 | 61 | 0.33 | 0.76 | 14 | IOD |
Compared structures
- 3VSN · The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q00704
- Elsewhere: RCSB PDB 3VSN · PDBe 3VSN · UniProt Q00704
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