MolNFT v1 · #82544 · protein
Crystal structure analysis of the PDZ domain derived from the tight junction regulating protein
3VQF · E3 ubiquitin-protein ligase lnx: “Crystal structure analysis of the PDZ domain derived from the tight junction regulating protein”. X-ray diffraction, 1 pocket (best druggability 0.35). MolNFT v1 #82544 on GenesisL1: 3D structure…
- PDB
- 3VQF
- Type
- protein
- Length
- 85 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- E3 ubiquitin-protein ligase lnx
- UniProt
- O70263
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 ubiquitin-protein ligase lnx | protein | 85 | 18% helix, 35% strand | O70263 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.35 | 0.76 | 13 | empty |
Compared structures
- 3VQF · Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating… · the same entry in another collection · chain A against A, TM-score 1.00
- O70263 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase lnx (O70263) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O70263
- Elsewhere: RCSB PDB 3VQF · PDBe 3VQF · UniProt O70263
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