MolNFT v1 · #82463 · protein

Crystal structure of ferritin from multicellular green algae, ulva pertusa.

3VNX: “Crystal structure of ferritin from multicellular green algae, ulva pertusa.”. X-ray diffraction, 1 ligand (CA), 2 pockets (best druggability 0.46). MolNFT v1 #82463 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3VNX
Type: protein
Length: 195 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ferritin
EC: 1.16.3.1
Ligands: CA
Pockets: 2 · best druggability 0.46

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ferritin (EC 1.16.3.1)	protein	195	74% helix, 0% strand	—

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	91	0.46	0.81	20	CA
2	55	0.29	0.74	16	empty

Compared structures

3VNX · Crystal structure of ferritin from multicellular green algae, Ulva pertusa. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3VNX · PDBe 3VNX

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