MolNFT v1 · #8246 · protein

18 kda fragment of N-II domain of duck ovotransferrin

1GV8: “18 kda fragment of N-II domain of duck ovotransferrin”. X-ray diffraction, 3 ligands (GLY, FE, CO3). MolNFT v1 #8246 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1GV8
Type: protein
Length: 159 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ovotransferrin
UniProt: P56410
Ligands: GLY, FE, CO3

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ovotransferrin	protein	159	35% helix, 19% strand	P56410

Ligands and binding sites

GLY · Glycine · ligand · chains A
FE · Fe (III) ion · metal · chains A
CO3 · Carbonate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

1GV8 · 18 kDa fragment of N-II domain of duck ovotransferrin · the same entry in another collection · chain A against A, TM-score 1.00
P56410 · AlphaFold monomer V2.0 prediction for ovotransferrin (P56410) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P56410
Elsewhere: RCSB PDB 1GV8 · PDBe 1GV8 · UniProt P56410

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