MolNFT v1 · #82400 · protein
Crystal structure of sphingomonas sp. A1 alginate-binding ptotein ALGQ1 in complex with unsaturated triguluronate
3VLV: “Crystal structure of sphingomonas sp. A1 alginate-binding ptotein ALGQ1 in complex with unsaturated…”. X-ray diffraction, 3 ligands (LGU, MAW, CA), 1 pocket (best druggability 0.83). MolNFT v1 #82400 on GenesisL1: 3D structure…
- PDB
- 3VLV
- Type
- protein
- Length
- 490 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ALGQ1
- UniProt
- Q9KWT6
- Ligands
- LGU, MAW, CA
- Pockets
- 1 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ALGQ1 | protein | 490 | 45% helix, 15% strand | Q9KWT6 |
Ligands and binding sites
- LGU · alpha-L-gulopyranuronic acid · ligand · 2 copies · chains A
- MAW · 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid · ligand · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1132 | 0.83 | 0.84 | 91 | LGU, MAW |
Compared structures
- 3VLV · Crystal structure of Sphingomonas sp. A1 alginate-binding ptotein AlgQ1 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KWT6
- Elsewhere: RCSB PDB 3VLV · PDBe 3VLV · UniProt Q9KWT6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.