MolNFT v1 · #82239 · protein
The crystal structure of hyperthermophilic family 12 endocellulase from pyrococcus furiosus
3VGI · Endoglucanase a: “The crystal structure of hyperthermophilic family 12 endocellulase from pyrococcus furiosus”. X-ray diffraction, 1 ligand (CA), 2 pockets (best druggability 0.56). MolNFT v1 #82239 on GenesisL1: 3D structure…
- PDB
- 3VGI
- Type
- protein
- Length
- 270 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endoglucanase a
- UniProt
- Q9V2T0
- Ligands
- CA
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endoglucanase a | protein | 270 | 6% helix, 55% strand | Q9V2T0 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
- GOL · Glycerol · additive · 11 copies · chains A
- NHE · 2-[N-cyclohexylamino]ethane sulfonic acid · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 229 | 0.56 | 0.78 | 28 | GOL |
| 2 | 53 | 0.38 | 0.80 | 13 | GOL |
Compared structures
- 3VGI · The crystal structure of hyperthermophilic family 12 endocellulase from Pyrococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9V2T0
- Elsewhere: RCSB PDB 3VGI · PDBe 3VGI · UniProt Q9V2T0
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