MolNFT v1 · #81945 · protein
Crystal structure of B. subtilis ylxq at 1.55 a resolution
3V7Q · Probable ribosomal protein ylxq: “Crystal structure of B. subtilis ylxq at 1.55 a resolution”. X-ray diffraction, 1 ligand (K), 1 pocket (best druggability 0.63). MolNFT v1 #81945 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3V7Q
- Type
- protein
- Length
- 291 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable ribosomal protein ylxq
- UniProt
- P32729
- Ligands
- K
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Probable ribosomal protein ylxq | protein | 97 | 51% helix, 16% strand | P32729 |
Ligands and binding sites
- K · Potassium ion · metal · 2 copies · chains A, B
- CIT · Citric acid · additive · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 494 | 0.63 | 0.76 | 42 | empty |
Interfaces
3 interfaces between chains.
- B–C · 400 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 152 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 99 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 3V7Q · Crystal structure of B. subtilis YlxQ at 1.55 A resolution · the same entry in another collection · chain A against A, TM-score 1.00
- P32729 · AlphaFold monomer V2.0 prediction for probable ribosomal protein ylxq (P32729) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32729
- Elsewhere: RCSB PDB 3V7Q · PDBe 3V7Q · UniProt P32729
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