MolNFT v1 · #81832 · protein
Crystal structure of an enolase from the soil bacterium cellvibrio japonicus (target efi-502161) with bound mg and L-tartrate
3V4B · Starvation sensing protein rspa: “Crystal structure of an enolase from the soil bacterium cellvibrio japonicus (target efi-502161) with bound…”. X-ray diffraction, 2 ligands (MG, CL), 1 pocket (best druggability 0.66). MolNFT v1…
- PDB
- 3V4B
- Type
- protein
- Length
- 384 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Starvation sensing protein rspa
- UniProt
- B3PDB1
- Ligands
- MG, CL
- Pockets
- 1 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Starvation sensing protein rspa | protein | 384 | 40% helix, 21% strand | B3PDB1 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · chains A
- TLA · L(+)-tartaric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 616 | 0.66 | 0.76 | 58 | TLA |
Compared structures
- 3V4B · Crystal structure of an enolase from the soil bacterium Cellvibrio japonicus (TARGET… · the same entry in another collection · chain A against A, TM-score 1.00
- B3PDB1 · AlphaFold monomer V2.0 prediction for D-galactonate dehydratase family member rspa… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3PDB1
- Elsewhere: RCSB PDB 3V4B · PDBe 3V4B · UniProt B3PDB1
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