MolNFT v1 · #81542 · protein
Crystal structure of bacteriorhodopsin mutant P50A/T46A
3UTY: “Crystal structure of bacteriorhodopsin mutant P50A/T46A”. X-ray diffraction, 2 ligands (RET, D12), 4 pockets (best druggability 0.81). MolNFT v1 #81542 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3UTY
- Type
- protein
- Length
- 454 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bacteriorhodopsin
- UniProt
- P02945
- Ligands
- RET, D12
- Pockets
- 4 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 76% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Bacteriorhodopsin | protein | 227 | 76% helix, 5% strand | P02945 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 142 | 0.81 | 0.97 | 25 | RET |
| 2 | 135 | 0.80 | 0.97 | 22 | RET |
| 3 | 364 | 0.76 | 0.85 | 39 | empty |
| 4 | 190 | 0.46 | 0.74 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 729 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 cofactor (retinal Schiff base).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02945
- Elsewhere: RCSB PDB 3UTY · PDBe 3UTY · UniProt P02945
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.