MolNFT v1 · #81480 · protein
Recombinant rabbit skeletal calsequestrin-mpd complex
3US3 · Calsequestrin-1: “Recombinant rabbit skeletal calsequestrin-mpd complex”. X-ray diffraction, 2 ligands (CA, NA), 8 pockets (best druggability 0.72). MolNFT v1 #81480 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3US3
- Type
- protein
- Length
- 353 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calsequestrin-1
- UniProt
- P07221
- Ligands
- CA, NA
- Pockets
- 8 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calsequestrin-1 | protein | 353 | 38% helix, 19% strand | P07221 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A
- NA · Sodium ion · metal · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 3 copies · chains A
- MRD · (4R)-2-methylpentane-2,4-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.72 | 0.91 | 19 | empty |
| 2 | 100 | 0.45 | 0.78 | 17 | MPD |
| 3 | 161 | 0.45 | 0.75 | 19 | MPD |
| 4 | 154 | 0.43 | 0.75 | 25 | NA |
| 5 | 79 | 0.34 | 0.75 | 18 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07221
- Elsewhere: RCSB PDB 3US3 · PDBe 3US3 · UniProt P07221
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.