MolNFT v1 · #81431 · protein
Crystal structure of the phosphofructokinase-2 mutant Y23D from escherichia COLI
3UQE · 6-phosphofructokinase isozyme 2: “Crystal structure of the phosphofructokinase-2 mutant Y23D from escherichia COLI”. X-ray diffraction, 3 ligands (ATP, POP, MG), 3 pockets (best druggability 0.73). MolNFT v1 #81431 on GenesisL1: 3D…
- PDB
- 3UQE
- Type
- protein
- Length
- 612 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 6-phosphofructokinase isozyme 2
- EC
- 2.7.1.11
- UniProt
- P06999
- Ligands
- ATP, POP, MG
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 38% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 6-phosphofructokinase isozyme 2 (EC 2.7.1.11) | protein | 307 | 38% helix, 21% strand | P06999 |
| B | 6-phosphofructokinase isozyme 2 (EC 2.7.1.11) | protein | 305 | 38% helix, 22% strand | P06999 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains A, B
- POP · Pyrophosphate 2- · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 625 | 0.73 | 0.80 | 80 | ATP, MG |
| 2 | 522 | 0.69 | 0.79 | 73 | MG, ATP |
| 3 | 252 | 0.50 | 0.74 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 1039 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 3UQE · Crystal structure of the Phosphofructokinase-2 mutant Y23D from Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
- P06999 · AlphaFold monomer V2.0 prediction for ATP-dependent 6-phosphofructokinase isozyme 2… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06999
- Elsewhere: RCSB PDB 3UQE · PDBe 3UQE · UniProt P06999
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.