MolNFT v1 · #81315 · protein
Crystal structure of MDC1 fha domain
3UN0 · Mediator of DNA damage checkpoint protein 1: “Crystal structure of MDC1 fha domain”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.57). MolNFT v1 #81315 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3UN0
- Type
- protein
- Length
- 216 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mediator of DNA damage checkpoint protein 1
- UniProt
- Q14676
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Mediator of DNA damage checkpoint protein 1 | protein | 107 | 0% helix, 44% strand | Q14676 |
| A | Mediator of DNA damage checkpoint protein 1 | protein | 109 | 0% helix, 46% strand | Q14676 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 7 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 179 | 0.57 | 0.80 | 25 | empty |
Interfaces
1 interface between chains.
- B–A · 551 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q14676
- Elsewhere: RCSB PDB 3UN0 · PDBe 3UN0 · UniProt Q14676
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