MolNFT v1 · #8127 · protein
Regulatory and catalytic mechanisms in escherichia COLI isocitrate dehydrogenase: multiple roles for N115
1GRO: “Regulatory and catalytic mechanisms in escherichia COLI isocitrate dehydrogenase: multiple roles for N115”. X-ray diffraction, 2 ligands (ICT, MG), 3 pockets (best druggability 0.62). MolNFT v1 #8127 on GenesisL1: 3D structure…
- PDB
- 1GRO
- Type
- protein
- Length
- 414 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Isocitrate dehydrogenase
- EC
- 1.1.1.42
- UniProt
- P08200
- Ligands
- ICT, MG
- Pockets
- 3 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Isocitrate dehydrogenase (EC 1.1.1.42) | protein | 414 | 40% helix, 19% strand | P08200 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 367 | 0.62 | 0.77 | 46 | empty |
| 2 | 125 | 0.41 | 0.76 | 26 | MG, ICT |
| 3 | 91 | 0.40 | 0.77 | 22 | empty |
Compared structures
- 1GRO · Regulatory and catalytic mechanisms in escherichia COLI isocitrate dehydrogenase… · the same entry in another collection · chain A against A, TM-score 1.00
- P08200 · AlphaFold monomer V2.0 prediction for isocitrate dehydrogenase [NADP] (P08200) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08200
- Elsewhere: RCSB PDB 1GRO · PDBe 1GRO · UniProt P08200
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