MolNFT v1 · #80511 · protein

Crystal structure of the humanized carboxyltransferase domain of yeast acetyl-CoA caroxylase in complex with compound 2

3TZ3 · Acetyl-CoA carboxylase: “Crystal structure of the humanized carboxyltransferase domain of yeast acetyl-CoA caroxylase in complex with…”. X-ray diffraction, 1 ligand (B36), 20 pockets (best druggability 0.82). MolNFT v1 #80511 on…

PDB: 3TZ3
Type: protein
Length: 2,062 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Acetyl-CoA carboxylase
EC: 6.4.1.2, 6.3.4.14
UniProt: Q00955
Ligands: B36
Pockets: 20 · best druggability 0.82

Structure

x-ray diffraction · 3 distinct chains · 40% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Acetyl-CoA carboxylase (EC 6.4.1.2, 6.3.4.14)	protein	694	40% helix, 20% strand	Q00955
B	Acetyl-CoA carboxylase (EC 6.4.1.2, 6.3.4.14)	protein	692	40% helix, 20% strand	Q00955
C	Acetyl-CoA carboxylase (EC 6.4.1.2, 6.3.4.14)	protein	676	41% helix, 20% strand	Q00955

Ligands and binding sites

B36 · 6-{[1-(anthracen-9-ylcarbonyl)piperidin-4-yl]methyl}-2-methylquinoline · ligand · 3 copies · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	734	0.82	0.86	63	empty
2	464	0.76	0.84	32	empty
3	482	0.75	0.84	57	B36
4	607	0.75	0.81	59	B36
5	520	0.70	0.80	38	empty

Interfaces

2 interfaces between chains.

B–C · 6013 Å² buried · 52 hydrogen bonds · protein-protein
A–B · 1390 Å² buried · 23 hydrogen bonds · protein-protein

Compared structures

3TZ3 · Crystal Structure of the humanized carboxyltransferase domain of yeast Acetyl-coA… · the same entry in another collection · chain A against A, TM-score 1.00
Q00955 · AlphaFold monomer V2.0 prediction for acetyl-CoA carboxylase (Q00955) · a predicted model of the same protein · chain C against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q00955
Elsewhere: RCSB PDB 3TZ3 · PDBe 3TZ3 · UniProt Q00955

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.