MolNFT v1 · #80462 · protein
Crystal structure of RPN6 from drosophila melanogaster, GD(3+) complex
3TXM · 26S proteasome regulatory complex subunit P42B: “Crystal structure of RPN6 from drosophila melanogaster, GD(3+) complex”. X-ray diffraction, 2 ligands (GD3, SO4), 1 pocket (best druggability 0.55). MolNFT v1 #80462 on GenesisL1: 3D…
- PDB
- 3TXM
- Type
- protein
- Length
- 353 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 26S proteasome regulatory complex subunit P42B
- UniProt
- Q7KLV9
- Ligands
- GD3, SO4
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 75% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 26S proteasome regulatory complex subunit P42B | protein | 353 | 75% helix, 3% strand | Q7KLV9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 299 | 0.55 | 0.75 | 40 | empty |
Compared structures
- 3TXM · Crystal structure of Rpn6 from Drosophila melanogaster, Gd(3+) complex · the same entry in another collection · chain A against A, TM-score 1.00
- Q7KLV9 · AlphaFold monomer V2.0 prediction for 26S proteasome non-ATPase regulatory subunit 11… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7KLV9
- Elsewhere: RCSB PDB 3TXM · PDBe 3TXM · UniProt Q7KLV9
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