MolNFT v1 · #80274 · protein
Crystal structure of stabilised vimentin COIL2 fragment
3TRT: “Crystal structure of stabilised vimentin COIL2 fragment”. X-ray diffraction, 2 ligands (SO4, NH4). MolNFT v1 #80274 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3TRT
- Type
- protein
- Length
- 148 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vimentin
- UniProt
- P08670
- Ligands
- SO4, NH4
Structure
x-ray diffraction · 2 distinct chains · 91% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vimentin | protein | 75 | 92% helix, 0% strand | P08670 |
| B | Vimentin | protein | 73 | 90% helix, 0% strand | P08670 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
- NH4 · Ammonium ion · ion
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1852 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 3TRT · Crystal structure of stabilised vimentin coil2 fragment · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08670
- Elsewhere: RCSB PDB 3TRT · PDBe 3TRT · UniProt P08670
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