MolNFT v1 · #80139 · protein

Structure of yfiy from bacillus cereus bound to the siderophore iron (III) schizokinen

3TNY · Yfiy (ABC transport system substrate-binding protein): “Structure of yfiy from bacillus cereus bound to the siderophore iron (III) schizokinen”. X-ray diffraction, 1 ligand (SKZ), 1 pocket (best druggability 0.61). MolNFT v1 #80139…

PDB: 3TNY
Type: protein
Length: 280 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Yfiy (ABC transport system substrate-binding protein)
UniProt: C2Y5Z3
Ligands: SKZ
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Yfiy (ABC transport system substrate-binding protein)	protein	280	45% helix, 21% strand	C2Y5Z3

Ligands and binding sites

SKZ · [2-(hydroxy-kappaO)-4-[(3-{(hydroxy-kappaO)[1-(hydroxy-kappaO)ethenyl]amino}propyl)amino]-2-{2-[(3-{(hydroxy-kappaO)[1- (hydroxy-kappaO)ethenyl]amino}propyl)amino]-2-oxoethyl}-4-oxobutanoato(6-)-kappaO]iron · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	181	0.61	0.83	25	SKZ

Compared structures

3TNY · Structure of YfiY from Bacillus cereus bound to the siderophore iron (III) schizokinen · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C2Y5Z3
Elsewhere: RCSB PDB 3TNY · PDBe 3TNY · UniProt C2Y5Z3

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