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Structure of yfiy from bacillus cereus bound to the siderophore iron (III) schizokinen

Analyse Structure of yfiy from bacillus cereus bound to the siderophore iron (III)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3TNY
Type: protein
Length: 280 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Yfiy (ABC transport system substrate-binding protein)
UniProt: C2Y5Z3
Ligands: SKZ
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Yfiy (ABC transport system substrate-binding protein)	protein	280	45% helix, 21% strand	C2Y5Z3

Ligands and binding sites

SKZ · [2-(hydroxy-kappaO)-4-[(3-{(hydroxy-kappaO)[1-(hydroxy-kappaO)ethenyl]amino}propyl)amino]-2-{2-[(3-{(hydroxy-kappaO)[1- (hydroxy-kappaO)ethenyl]amino}propyl)amino]-2-oxoethyl}-4-oxobutanoato(6-)-kappaO]iron · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	181	0.61	0.83	25	SKZ

Compared structures

3TNY · Structure of YfiY from Bacillus cereus bound to the siderophore iron (III) schizokinen · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt C2Y5Z3
Elsewhere: RCSB PDB 3TNY · PDBe 3TNY · UniProt C2Y5Z3

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