MolNFT v1 · #80062 · protein

TRNA-guanine transglycosylase in complex with N-ethyl-lin-benzoguanine inhibitor

3TLL · Queuine tRNA-ribosyltransferase: “TRNA-guanine transglycosylase in complex with N-ethyl-lin-benzoguanine inhibitor”. X-ray diffraction, 2 ligands (62D, ZN), 2 pockets (best druggability 0.62). MolNFT v1 #80062 on GenesisL1: 3D…

PDB: 3TLL
Type: protein
Length: 366 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Queuine tRNA-ribosyltransferase
EC: 2.4.2.29
UniProt: P28720
Ligands: 62D, ZN
Pockets: 2 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Queuine tRNA-ribosyltransferase (EC 2.4.2.29)	protein	366	47% helix, 19% strand	P28720

Ligands and binding sites

62D · 6-(ethylamino)-2-(methylamino)-3,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one · ligand · chains A
ZN · Zinc ion · metal · chains A
GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	208	0.62	0.82	39	62D
2	57	0.37	0.79	17	empty

Compared structures

3TLL · tRNA-Guanine Transglycosylase in complex with N-Ethyl-lin-benzoguanine Inhibitor · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P28720
Elsewhere: RCSB PDB 3TLL · PDBe 3TLL · UniProt P28720

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