MolNFT v1 · #79926 · protein
Crystal structure of MRE11 core with manganese
3THN · Exonuclease, putative: “Crystal structure of MRE11 core with manganese”. X-ray diffraction, 2 ligands (MN, SO4), 3 pockets (best druggability 0.43). MolNFT v1 #79926 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3THN
- Type
- protein
- Length
- 313 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Exonuclease, putative
- UniProt
- Q9X1X0
- Ligands
- MN, SO4
- Pockets
- 3 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Exonuclease, putative | protein | 313 | 28% helix, 28% strand | Q9X1X0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 111 | 0.43 | 0.77 | 21 | empty |
| 2 | 57 | 0.34 | 0.77 | 14 | empty |
| 3 | 67 | 0.29 | 0.73 | 13 | SO4 |
Compared structures
- 3THN · Crystal structure of Mre11 core with manganese · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X1X0
- Elsewhere: RCSB PDB 3THN · PDBe 3THN · UniProt Q9X1X0
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