MolNFT v1 · #79539 · protein
Crystal structure of nickel ABC transporter from bacillus halodurans
3T66 · Nickel ABC transporter (nickel-binding protein): “Crystal structure of nickel ABC transporter from bacillus halodurans”. X-ray diffraction, 1 ligand (CA), 7 pockets (best druggability 0.64). MolNFT v1 #79539 on GenesisL1: 3D…
- PDB
- 3T66
- Type
- protein
- Length
- 475 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nickel ABC transporter (nickel-binding protein)
- UniProt
- Q9KBX8
- Ligands
- CA
- Pockets
- 7 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nickel ABC transporter (nickel-binding protein) | protein | 475 | 28% helix, 26% strand | Q9KBX8 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.64 | 0.93 | 17 | empty |
| 2 | 50 | 0.61 | 0.93 | 22 | empty |
| 3 | 118 | 0.58 | 0.85 | 26 | empty |
| 4 | 165 | 0.54 | 0.80 | 25 | empty |
| 5 | 321 | 0.54 | 0.74 | 39 | empty |
Compared structures
- 3T66 · Crystal structure of Nickel ABC transporter from Bacillus halodurans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KBX8
- Elsewhere: RCSB PDB 3T66 · PDBe 3T66 · UniProt Q9KBX8
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