MolNFT v1 · #78945 · protein
Crystal structure of a putativel nudix hydrolase (LMOF2365_2679) from listeria monocytogenes str. 4B F2365 at 1.70 a resolution
3SON · Hypothetical nudix hydrolase: “Crystal structure of a putativel nudix hydrolase (LMOF2365_2679) from listeria monocytogenes str. 4B F2365 at…”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.70). MolNFT v1 #78945 on…
- PDB
- 3SON
- Type
- protein
- Length
- 293 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical nudix hydrolase
- UniProt
- Q71W72
- Ligands
- CA
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical nudix hydrolase | protein | 147 | 28% helix, 35% strand | Q71W72 |
| B | Hypothetical nudix hydrolase | protein | 146 | 26% helix, 36% strand | Q71W72 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 484 | 0.70 | 0.80 | 67 | empty |
Interfaces
1 interface between chains.
- A–B · 906 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3SON · Crystal structure of a putativel NUDIX hydrolase (LMOf2365_2679) from Listeria… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q71W72
- Elsewhere: RCSB PDB 3SON · PDBe 3SON · UniProt Q71W72
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.