MolNFT v1 · #7885 · protein
Human vimentin coil 2B fragment linked to GCN4 leucine zipper (Z2B)
1GK6: “Human vimentin coil 2B fragment linked to GCN4 leucine zipper (Z2B)”. X-ray diffraction. MolNFT v1 #7885 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1GK6
- Type
- protein
- Length
- 107 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vimentin
- UniProt
- P03069, P08670
Structure
x-ray diffraction · 2 distinct chains · 93% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vimentin | protein | 55 | 89% helix, 0% strand | P03069, P08670 |
| B | Vimentin | protein | 52 | 96% helix, 0% strand | P03069, P08670 |
Interfaces
1 interface between chains.
- A–B · 1371 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 1GK6 · Human vimentin coil 2B fragment linked to GCN4 leucine zipper (Z2B) · the same entry in another collection · chain A against A, TM-score 1.00
- P03069 · AlphaFold monomer V2.0 prediction for general control transcription factor GCN4 (P03069) · a predicted model of the same protein · chain B against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03069
- Every structure of UniProt P08670
- Elsewhere: RCSB PDB 1GK6 · PDBe 1GK6 · UniProt P03069 · UniProt P08670
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