MolNFT v1 · #78825 · protein
MDM38 is a 14-3-3-like receptor and associates with the protein synthesis machinery at the inner mitochondrial membrane
3SKQ · Mitochondrial distribution and morphology protein 38: “MDM38 is a 14-3-3-like receptor and associates with the protein synthesis machinery at the inner…”. X-ray diffraction, 2 ligands (K, IOD), 3 pockets (best druggability 0.49).…
- PDB
- 3SKQ
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mitochondrial distribution and morphology protein 38
- UniProt
- Q08179
- Ligands
- K, IOD
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 65% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mitochondrial distribution and morphology protein 38 | protein | 227 | 65% helix, 4% strand | Q08179 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.49 | 0.78 | 28 | empty |
| 2 | 68 | 0.33 | 0.76 | 20 | empty |
| 3 | 63 | 0.30 | 0.74 | 18 | IOD |
Compared structures
- 3SKQ · Mdm38 is a 14-3-3-like receptor and associates with the protein synthesis machinery at… · the same entry in another collection · chain A against A, TM-score 1.00
- Q08179 · AlphaFold monomer V2.0 prediction for mitochondrial distribution and morphology protein… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08179
- Elsewhere: RCSB PDB 3SKQ · PDBe 3SKQ · UniProt Q08179
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