MolNFT v1 · #78761 · protein
Crystal structure of nodz alpha-1,6-fucosyltransferase co-crystallized with GDP
3SIW · Nodulation fucosyltransferase nodz: “Crystal structure of nodz alpha-1,6-fucosyltransferase co-crystallized with GDP”. X-ray diffraction, 2 ligands (GDP, PO4), 3 pockets (best druggability 0.44). MolNFT v1 #78761 on GenesisL1: 3D…
- PDB
- 3SIW
- Type
- protein
- Length
- 290 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nodulation fucosyltransferase nodz
- EC
- 2.4.1.-
- UniProt
- Q9AQ17
- Ligands
- GDP, PO4
- Pockets
- 3 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nodulation fucosyltransferase nodz (EC 2.4.1.-) | protein | 290 | 44% helix, 20% strand | Q9AQ17 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.44 | 0.75 | 18 | GDP |
| 2 | 91 | 0.36 | 0.74 | 12 | empty |
| 3 | 69 | 0.30 | 0.74 | 14 | empty |
Compared structures
- 3SIW · Crystal structure of NodZ alpha-1,6-fucosyltransferase co-crystallized with GDP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AQ17
- Elsewhere: RCSB PDB 3SIW · PDBe 3SIW · UniProt Q9AQ17
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